Sample information


Rarefaction curves

Figure 1. Rarefaction curves for each sample.


Most abundant taxa

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Species
Genus
Family
Order
Class
Phylum


Taxonomic groups

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Phylum


Multivariate analysis

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PCoA
## [1] "type-> ADONIS P=0.001 R2=0.402"

3D PCoA


Multivariate analysis

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NMDS
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.1126282 
## Run 1 stress 0.1126194 
## ... New best solution
## ... Procrustes: rmse 0.0009612178  max resid 0.00694721 
## ... Similar to previous best
## Run 2 stress 0.1126194 
## ... New best solution
## ... Procrustes: rmse 2.530234e-05  max resid 9.210104e-05 
## ... Similar to previous best
## Run 3 stress 0.1843044 
## Run 4 stress 0.1126284 
## ... Procrustes: rmse 0.001017846  max resid 0.007370538 
## ... Similar to previous best
## Run 5 stress 0.1126195 
## ... Procrustes: rmse 3.666709e-05  max resid 0.0002331661 
## ... Similar to previous best
## Run 6 stress 0.1460313 
## Run 7 stress 0.1460314 
## Run 8 stress 0.1796274 
## Run 9 stress 0.1126195 
## ... Procrustes: rmse 6.852509e-05  max resid 0.0004179375 
## ... Similar to previous best
## Run 10 stress 0.1451224 
## Run 11 stress 0.1126194 
## ... Procrustes: rmse 4.641311e-05  max resid 0.0002859564 
## ... Similar to previous best
## Run 12 stress 0.1771271 
## Run 13 stress 0.1126195 
## ... Procrustes: rmse 8.559625e-05  max resid 0.0005417228 
## ... Similar to previous best
## Run 14 stress 0.1448533 
## Run 15 stress 0.1878879 
## Run 16 stress 0.185972 
## Run 17 stress 0.1126194 
## ... New best solution
## ... Procrustes: rmse 1.222346e-05  max resid 7.442041e-05 
## ... Similar to previous best
## Run 18 stress 0.1471684 
## Run 19 stress 0.1126283 
## ... Procrustes: rmse 0.0009855557  max resid 0.00712137 
## ... Similar to previous best
## Run 20 stress 0.1448544 
## *** Solution reached
DCA
CCA
RDA


Analysis of Similarities (ANOSIM)

Significance Statistic
Anosim 0.001 0.8555739


Diversity indexes

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Chao1
Simpson
Shannon


Heatmap


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